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2013 IEEE High Performance
Extreme Computing Conference
(HPEC ‘13)
Seventeenth Annual HPEC Conference
10 - 12 September 2013
Westin Hotel, Waltham, MA USA
Tuesday, September 10
OMG VSIPL (1pm-5pm)[Emerson]
Organizers: Stefan Seefield & Tony Skjellum
Tutorial: Analyzing Big Data with Matlab and D4M (1pm-5pm)[Cambridge]
Instructors: Jeremy Kepner, Chansup Byun, Julie Mullen, MIT Lincoln Laboratory
Tutorial: Programming an FPGA using OpenCL (9am-noon)[Garfield]
Instructor: Deshanand Singh, Director of High-Level Design at Altera
Tutorial: Using OpenMP to accelerate an ARM system using DSP cores (1pm-5pm)[Garfield]
Instructor: Ian Linault, Managing Director of nCore
Wednesday, September 11 Morning
Extreme Computing Plenary Session (9:00-10:45)[Eden Vale B]
Chair: Bob Bond / MIT Lincoln Laboratory (9:00)
Keynote:
Title: Intel Xeon Phi (9:15)
Dr. Pradeep Dubey, Intel Fellow & IEEE Fellow
Invited Speakers:
Open-System, Adiabatic Quantum Annealing (9:45)
Dr. Robert Lucas, Director Computational Sciences USC ISI
Performance/Power Envelope (10:15)
Mr. Sanjive Argawala, Texas Instruments Fellow & Director of Silicon Development
Break (10:45-11:00)
Clouds & Grids (11:00-12:30)[Eden Vale A1]
Chair: Patrick Dreher / DRC
Invited Talk: Simulation as a Service
Ashok Krishnamurthy, RENCI
LLSuperCloud: Sharing HPC Systems for Diverse Rapid Prototyping
Albert Reuther, Jeremy Kepner, William Arcand, David Bestor, Bill Bergeron, Chansup Byun, Matthew Hubbell, Peter
Michaleas, Julie Mullen, Andrew Prout, Antonio Rosa,
MIT Lincoln Laboratory
Paper || Presentation
An Improved Eigensolver for Quantum-dot Cellular Automata Simulations
A. Taylor Baldwin, Jeffrey Will, Douglas Tougaw
Valparaiso University
Paper || Presentaion
GPU (11:00-12:30)[Eden Vale A2]
Chair: James Lebak / Mathworks
PAKCK: Performance and Power Analysis of Key Computational Kernels on CPUs and GPUs
Julia S. Mullen, Michael M. Wolf, Anna Klein
MIT Lincoln Laboratory
Paper || Presentation
CrowdCL: Web-Based Volunteer Computing with WebCL
Tommy MacWilliam, Cris Cecka
Harvard
Paper || Presentation
GPU-Based Space-Time Adaptive Processing (STAP) for Radar
Thomas M. Benson and Ryan Hersey, GTRI
Edwin Culpepper, AFRL
Paper || Presentation
Secure Embedded Systems (11:00-12:30)[Eden Vale C1]
Chair: Praveen Sharma / MIT Lincoln Laboratory
Invited Talk: Modeling Attack Resistant PUF Design Based on Non-linear Current Mirrors
Raghavan Kumar, Wayne Burleson
University of Massachusetts
Invited Talk: A Security Analysis of Amazon’s Elastic Compute Cloud Service
Engin Kirda, Northeastern University
FPGA (11:00-12:30)[Eden Vale C2]
Chair: David Cousins / BBN
Real-Time Traffic Sign Detection Using SURF Features on FPGA
Jin Zhao, Sichao Zhu, Xinming Huang
Worcester Polytechnic Institute
Paper || Presentation
Vendor Agnostic, High Performance, Double Precision Floating Point Division for FPGAs
Xin Fang, Miriam Leeser
Northeastern University
Paper || Presentation
FPGA-based Hyperspectral Covariance Coprocessor for Size, Weight, and Power Constrained Platforms
David A. Kusinsky, MIT Lincoln Laboratory
Miriam Leeser, Northeastern University
Paper || Presentation
Lunch; View Posters and Demos (12:30-1:30)[Emerson]
Wednesday, September 11 Afternoon
Clouds & Grids (1:30-3:00)[Eden Vale A1]
Chair: Patrick Dreher / DRC
A Mechanism to Improve the Performance of Hybrid MPI-OpenMP Applications in Grid
Shikha Mehrotra, Shamjith KV, Prachi Pandey, Asvija B, R Sridharan
Centre for Development of Advanced Computing, Government of India
Paper || Presentation
Expanding the High Performance Embedded ComputingTool Chest - Mixing C and Java
Nazario Irizarry, Jr., MITRE
Paper || Presentation
GPU (1:30-3:00)[Eden Vale A2]
Chair: James Lebak / Mathworks
Re-Introduction of Communication-Avoiding FMM-Accelerated FFTs with GPU Acceleration
M. Harper Langston, Muthu Baskaran, Benoˆıt Meister, Nicolas Vasilache, Richard Lethin
Reservoir Labs
Paper || Presentation
Accelerating a Novel Particle-based Fluid Simulation on the GPU
Zhilu Chen, James Kingsley, Xinming Huang, Erkan Tüzel
Worcester Polytechnic Institute
Paper || Presentation
GPU Accelerated Elevation Map based Registration of Aerial Images
Joseph French, William Turri, Joseph Fernando, Eric Balster
University of Dayton
Paper || Presentation
Graphs & Sparse Matrices (1:30-3:00)[Eden Vale C1]
Chair: Jeremy Kepner / MIT Lincoln Laboratory
A Nested Dissection Partitioning Method for Parallel Sparse Matrix-Vector Multiplication
Erik G. Boman, Sandia
Michael M. Wolf, MIT Lincoln Laboratory
Paper || Presentation
Novel Algebras for Advanced Analytics in Julia
Viral Shah, JuliaLang.org
Alan Edelman, Stefan Karpinski, Jeff Bezanson, Jeremy Kepner
MIT CSAIL
Paper || Presentation
Standards for Graph Algorithm Primitives
Tim Mattson (Intel), David Bader (Ga Tech), Jon Berry (Sandia), Aydin Buluc (LBNL), Jack Dongarra (University of Tennessee),
Christos Faloutsos (CMU), John Feo (PNNL), John Gilbert (UC Santa Barbara), Joseph Gonzalez (UC Berkeley), Bruce
Hendrickson (Sandia), Jeremy Kepner (MIT), Charles Leiserson (MIT), Andrew Lumsdaine (Indiana University), David Padua
(University of Illinois), Stephen Poole (ORNL), Steve Reinhardt (Cray), Mike Stonebraker (MIT), Steve Wallach (Convey),
Andrew Yoo (LLNL)
Paper || Presentation
FPGA (1:30-3:00)[Eden Vale C2]
Chair: David Cousins / BBN
High Performance Embedded Computing Module Enabled by GPU, CPU and FPGA SOCs
Jason Fritz, Joshua Pearson, Michael Bonato
Colorado Engineering
Paper || Presentaion
Block Processor: A Resource-distributed Architecture
Zeke Wang, Zhejiang University
Paper || Presentation
Dynamically Configurable Online Statistical Flow Feature Extractor on FPGA
Da Tong, Viktor Prasanna
University of Southern California
Paper || Presentation
Break (3:00-3:30)
Panel: SHPEC - Secure High Performance Extreme Computing (3:30-5:00)[Eden Vale B]
Chair: Craig Lund / Local Knowledge
Panelists: Michael Vai, Richard Linderman
Reception; View Posters and Demos; Attend BoFs (5:00-8:00)
OMG VSIPL - Current and Upcoming Solutions for Performance, Portable Signal and Image Processing (6:00-7:00) [Eden
Vale C3]
Chair: Tony Skjellum / Run Time Computing Solutions
Energy Efficient HPC BoF (6:00-7:00) [Eden Vale A1]
Chair: Kurt Keville / MIT
Graph Primitives (6:00-7:00) [Eden Vale C1]
Chair: Timothy Mattson / Intel
Posters/Demos September 11 and 12 All Day [Emerson and Lower Foyer]
Vendor Demos [Lower Foyer]:
GE Intelligent Platforms - Signal and Image Processing Demonstrations
Peter Thompson, Senior Business Development Manager
BrownDwarf ARM+DSP Supercomputer Demo
nCore HPC
Ian Lintault
Efficient Gbit/s Data Transceivers Designed for Verification and SoC Integration
Analog Circuit Works, Inc.
Dr. Bill Ellersick
Paper || Presentation
OpenCL Programming for FPGA Applications
BittWare
Kristen Zaffini, MarCom Manager
KeyDSP: Products Leveraging multicore ARM/DSP technology to Deliver Power Efficiency and Accelerated
Performance to Signal Processing Applications
CSP Inc.
Ann Desrochers
VSI/Pro®
RunTime Computing Solutions
Jennifer Skjellum
Using SciDB, A New Array Database for Scalable, In-database Complex Analytics
Paradigm4
Marilyn Matz
Posters [Emerson]
GPU Accelerated Blood Flow Computation using the Lattice Boltzmann Method
Cosmin Niţă, Lucian Mihai Itu
Transilvania University
Constantin Suciu, Siemens
Paper || Presentation
Enhancing a Cross-Platform Hyperspectral Image Analysis Library for Heterogeneous CUDA Support
Brian A. Landron-Rivera, Jonathan Torres-Conty, Nayda G. Santiago
University of Puerto Rico
Paper || Presentation
Acceleration of Particle Physics using FPGA-based Vector Processors with Narrow Custom Vector ALU Operations
Aaron Severance, Joe Edwards, and Guy G.F. Lemieux
VectorBlox
Efficient Parallel Runtime Bounds Checking with the TAU Performance System
John C. Linford, Sameer Shende, Allen D. Malony
ParaTools
Andrew Wissink, NASA Ames
Paper || Presentation
Parallel CPU and GPU Computations to Solve the Job Shop Scheduling Problem with Blocking
Abdelhakim AitZai, Adel Dabah, Mourad Boudhar
University of Science and Technology - Houari Boumediene
Paper || Presentation
Accelerating Monte Carlo Molecular Simulations Using Novel Extrapolation Schemes Combined with Fast Database
Generation on Massively Parallel Machines
Sahar Amir, Ahmad Kadoura, Amgad Salama, Shuyu Sun
King Abdullah University of Science and Technology
Paper || Presentation
Big Data Analysis using Distributed Actors Framework
Sanjeev Mohindra, Daniel Hook, Andrew Prout, Ai-Hoa Sanh, An Tran, Charles Yee
MIT Lincoln Laboratory
Paper || Presentation
Tuning HPEC Linux Clusters for Real-time Determinism
David Tetley, Joe Rolfe
GE Intelligent Platforms
Thursday September 12 Morning
Extreme Data Plenary Session (9:00-10:45) [Eden Vale B]
Chair: Dr. Albert Reuther / MIT Lincoln Laboratory (9:00)
Keynote:
Big Data (9:15)
Prof. Michael Stonebraker, MIT CSAIL & ACM Fellow
Invited Speakers:
Computing Architectures for ISR: Emerging Trends (9:45)
Mr. Robert Bond / Assistant Division Head MIT Lincoln Laboratory
Securing Embedded Systems (10:15)
Dr. Richard Linderman, Chief Scientist Information Directorate, AFRL & IEEE Fellow
Break (10:45-11:00)
Big Data (11:00-12:30) [Eden Vale A1]
Chair: Sharon Sacco
D4M 2.0 Schema: A General Purpose High Performance Schema for the Accumulo Database
Jeremy Kepner, Christian Anderson, William Arcand, David Bestor, Bill Bergeron, Chansup Byun, Matthew Hubbell, Peter
Michaleas, Julie Mullen, David O’Gwynn, Andrew Prout, Albert Reuther, Antonio Rosa, Charles Yee
MIT Lincoln Laboratory
Paper || Presentation
Understanding Query Performance in Accumulo
Scott M. Sawyer, B. David O’Gwynn, An Tran, Tamara Yu
MIT Lincoln Laboratory
Paper || Presentation
Big Snapshot Stitching with Scarce Overlap
Alexandros-Stavros Iliopoulos, Jun Hu, Nikos Pitsianis, Xiaobai Sun, David Brady
Duke University
Michael Gehm, University of Arizona
Paper || Presentation
Sensor Processing (11:00-12:30) [Eden Vale A2]
Chair: Sanjeev Mohindra / MIT Lincoln Laboratory
Biquad Implementation of an IIR Filter for IQ Mismatch Correction in an SoC RF Receiver
Karen Gettings, Michael N. Ericson, Andrew K. Bolstad, Xiao Wang
MIT Lincoln Laboratory
Paper || Presentation
Miniature Radar for Mobile Devices
Praveen Sharma, Raoul Ouedraogo, Bradley Perry, David Aubin, Todd Levy, Daniel Souza, Jonathan Kitchens, John Peabody
MIT Lincoln Laboratory
Paper || Presentation
3D FFT for FPGAs
Ben Humphries, Martin C. Herbordt
Boston University
Paper || Presentation
Secure Embedded Systems (11:00-12:30) [Eden Vale C1]
Chair: Praveen Sharam / MIT Lincoln Laboratory
Invited Talk: Software-Defined IDS for Securing Embedded Mobile Devices
Richard Skowyra, Sanaz Bahargam, Azer Bestavros
Boston University
Paper || Presentation
Invited Talk: Quantifying Side Channel Leakage with Novel Algorithmic Confusion Analysis
Yunsi Fei, A. Adam Ding, Jian Lao
Northeastern University
FPGA (11:00-12:30) [Eden Vale C2]
Chair: David Cousins / BBN
High-performance Dynamic Programming on FPGAs with OpenCL
Sean Settle, Altera
Paper || Presentation
High Throughput Energy Efficient Multi-FFT Architecture on FPGAs
Ren Chen, University of Southern California
Neungsoo Park, Konkuk University
Viktor Prasanna, University of Southern California
Paper || Presentation
Evaluating Energy Efficiency of Floating Point Matrix Multiplication on FPGAs
Kiran Kumar Matamm, Hoang Le, Viktor Prasanna
University of Southern California
Paper || Presentation
Lunch; View Posters and Demos (12:30-1:30)[Emerson]
Thursday September 12 Afternoon
Big Data (1:30-3:00) [Eden Vale A1]
Chair: Sharon Sacco
Image Search System
Peter Cho, Michael Yee
MIT Lincoln Laboratory
Paper || Presentation
Optimizing Performance of HPC Storage Systems
Torben Kling Petersen, John Fragalla
Xyratex
Paper || Presentation
A Clustered Manycore Processor Architecture for Embedded and Accelerated Applications
Benoit Dupont de Dinechin, Renaud Ayrignac, Pierre-Edouard Beaucamps, Patrice Couvert, Francois Jacquet, Samuel Jones,
Nicolas Morey Chaisemartin, Frederic Riss, Thierry Strudel
Kalray SA
Paper || Presentation
Rising Stars - Sponsored by Mitre Corporation (1:30-3:00)[Eden Vale A2]
Chair: Brian Sroka / The MITRE Corporation
Robust Graph Traversal: Resiliency Techniques for Data Intensive Supercomputing
Saurabh Hukerikar, Pedro Diniz, Robert Lucas
University of Southern California - Information Sciences Institute
Paper || Presentation
Task Scheduling for Reconfigurable Systems in Dynamic Fault-Rate Environments
Adam Jacobs, Nicholas Wulf, Alan D. George
University of Florida
Paper || Presentation
Adaptive Routing in Hexagonal Torus Interconnection Networks
Arash Shamaei, Bella Bose, Mary Flahive
Oregon State University
Paper || Presentation
Secure Embedded Systems (1:30-3:00)[Eden Vale C1]
Chair: David Kaeli / Northeastern University
Invited Talk: Integrity Verification for Path Oblivious-RAM
Ling Ren, Christopher Fletcher, Xiangyao Yu, Marten van Dijk, Srinivas Devadas
MIT CSAIL
Paper || Presentation
A Novel Fast Modular Multiplier Architecture for 8,192-bit RSA Cryposystem
Wei Wang, Xinming Huang
Worcester Polytechnic Institute
Paper || Presentation
Efficient Gbit/s Data Transceivers Designed for Verification and SoC Integration
William Ellersick, Analog Circuit Works
Break (3:00-3:30)
Best Paper Awards (3:30-5:30)[Eden Vale B]]
Chair: Dr. Jeremy Kepner / MIT Lincoln Laboratory
Exploiting Free Silicon for Energy-Efficient Computing Directly in NAND Flash-based Solid-State Storage Systems
Peng Li, University of Minnesota, Kevin Gomez, Seagate Technology, David J. Lilja, University of Minnesota
Paper || Presentation
Accelerating Sparse Matrix-Matrix Multiplication with 3D-Stacked Logic-in-Memory Hardware - Winner of the Best Paper Award
Qiuling Zhu, Tobias Graf, H. Ekin Sumbul, Larry Pileggi, Franz Franchetti
Carnegie Mellon University
Paper || Presentation
Instruction Set Extensions for Photonic Synchronous Coalesced Accesses
Paul Keltcher, David Whelihan, Jeffrey Hughes
MIT Lincoln Laboratory
Paper || Presentation
SIMD Acceleration of Modular Arithmetic on Contemporary Embedded Platforms
Krishna Chaitanya Pabbuleti, Deepak Hanamant Mane, Avinash Desai, Curt Albert, Patrick Schaumont
Virginia Polytechnic and State University
Paper || Presentation