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2012 IEEE High Performance Extreme Computing Conference (HPEC ‘12) Sixteenth Annual HPEC Conference 10 - 12 September 2012 Westin Hotel, Waltham, MA USA

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Conference Program Monday, September 10 Bio Computing Challenge Day  Organizer: Peter Carr, MIT Lincoln Laboratory, USA HPEC Tutorial: Embedded and Distributed Systems  Authors: David Martinez, Robert Bond, Michael Vai MIT Lincoln Laboratory, USA Tuesday, September 11 Morning Plenary Session, Chair: David Martinez / MIT Lincoln Laboratory, USA (9:00) Keynote: Title: COTS and the End of Moore’s Law Presentation Dr. Robert Colwell, Deputy Director DARPA Microsystems Technology Office, USA Invited Speakers: High-Performance Dynamic Programming Prof. Alan Edelman, MIT, USA Multicore and FPGA Languages and Monitoring Prof. Roger Chamberlain, Washington University, USA Computer Architecture - Sponsored by Mentor Graphics, Chair: Miriam Leeser / Northeastern University, USA A Third Generation Many-Core Processor for Secure Embedded Computing Systems John Irza, Coherent Logix, Inc., USA Michael Doerr, Coherent Logix, Inc, USA Michael Solka, Coherent Logix, Inc., USA Presentation | Paper Exploiting SPM-aware Scheduling on EPIC Architectures for High-Performance Real-Time Systems Yu Liu, Virginia Commonwealth University, USA Wei Zhang, Virginia Commonwealth University, USA Presentation | Paper Using Copper Water Loop Heat Pipes to Efficiently Cool CPUs and GPUs Yury F. Maydanik, Russian Academy of Sciences, Russia Sergei V. Vershinin, Russian Academy of Sciences, Russia Vladmimir G. Pastukhov, Russian Academy of Sciences, Russia Yushakova S. , Russian Academy of Sciences, Russia Chernysheva M. , Russian Academy of Sciences, Russia Stephen Fried, Microway, Inc., USA Mike Reynolds, Microway, Inc., USA Presentation | Paper GPU, Chair: Dan Campbell / GTRI, USA High locality and increased intra-node parallelism for solving finite element models on GPUs by novel element-by-element implementation Zsolt Badics, Tensor Research LLC, USA Imre Kiss, Budapest University of Technology and Economics, Hungary Szabolcs Gyimóthy, Budapest University of Technology and Economics, Hungary József Pávó, Budapest University of Technology and Economics, Hungary Presentation | Paper Accelerating Fully Homomorphic Encryption on GPUs Wei Wang, Worcester Polytechnic Institute, USA Yin Hu, Worcester Polytechnic Institute, USA Lianmu Chen, Worcester Polytechnic Institute, USA Xinming Huang, Worcester Polytechnic Institute, USA Berk Sunar, Worcester Polytechnic Institute, USA Presentation | Paper Use of CUDA for the Continuous Space Language Model Elizabeth A.Thompson, Ph.D., Purdue University Fort Wayne, USA Timothy Anderson, Ph.D., Wright Patterson Air Force Base, USA Presentation | Paper Mapping & Scheduling, Chair: Nadya Bliss / MIT Lincoln Laboratory, USA Graph Programming Model - An Efficient Approach for Sensor Signal Processing Steve Kirsch, Raytheon Space and Airborne Systems, USA Presentation | Paper An Application of the Constraint Programming Paradigm to the Design and Operation of Synthetic Aperture Radars Michael Holzrichter, Sandia National Laboratories, USA Presentation | Paper LLMORE: A Framework for Data Mapping and Architecture Analysis Michael Wolf, MIT Lincoln Laboratory, USA Michelle Beard, MIT Lincoln Laboratory, USA Nadya Bliss, MIT Lincoln Laboratory, USA Anna Klein, MIT Lincoln Laboratory, USA Sanjeev Mohindra, MIT Lincoln Laboratory, USA Julie Mullen, MIT Lincoln Laboratory, USA Eric Robinson, MIT Lincoln Laboratory, USA Presentation | Paper Not Available HPC, Chair: Patrick Dreher / DRC, USA Unitary Qubit Lattice Simulations of Complex Vortex Structures George Vahala, College of William and Mary, USA Jeffrey Yepez, AFRL/RDSM, MHPCC SDRC, USA Linda Vahala, Old Dominion University, USA Min Soe, Rogers State University, USA Presentation Not Available | Paper Not Available Early Experiences with Energy-Aware Scheduling Kathleen A. Smith, ARL DSRC, USA William DeSalvo, Instrumental, USA Michael P. Knowles, Lockheed Martin, USA Phillip G Matthews, Lockheed Martin, USA James C. Ianni, Lockheed Martin, USA Chris Sauerwald, Altair, USA Thomas M. Kendall, ARL DSRC, USA Presentation | Paper Isolating Runtime Faults with Callstack Debugging using TAU Sameer Shende, ParaTools, Inc., USA Allen D. Malony, ParaTools, Inc., USA John C. Linford, ParaTools, Inc., USA Andrew Wissink, U.S. Army Aeroflighdynamics Directorate, Ames Research Center, USA Stephen Adamec, University of Alabama at Birmingham, USA Presentation | Paper Tuesday, September 11 Afternoon Computer Architecture - Sponsored by Mentor Graphics, Chair: Prof. Michael Vai / MIT Lincoln Laboratory, USA Fast Functional Simulation with a Dynamic Language Craig S. Steele, Exogi LLC, USA JP Bonn, Exogi LLC, USA Presentation | Paper Power and Performance Comparison of HPEC Challenge Benchmarks on Various Processors Sharad Mehta, Mercury Computer Systems, USA Erik Kramer, Mercury Computer Systems, USA Ari Berman, Mercury Computer Systems, USA Suresh Govindachar, Mercury Computer Systems, USA Elad Shahar, Mercury Computer Systems, USA Presentation Not Available | Paper Not Available Synthetic Aperture Radar on Low Power Multi-Core Digital Signal Processor Dan Wang, Texas Instruments, USA Murtaza Ali, Texas Instruments, USA Presentation | Paper GPU, Chair: Sharon Sacco / The MITRE Corporation, USA Integration and Development of the 500 TFLOPS Heterogeneous Cluster (Condor) Mark Barnell, Air Force Research Laboratory Information Directorate, USA Qing Wu, Air Force Research Laboratory Information Directorate, USA Ryan Luley, Air Force Research Laboratory Information Directorate, USA Presentation | Paper Ruggedization of MXM Graphics Modules Ivan Straznicky, Curtiss-Wright Controls Defense Solutions, Canada Presentation | Paper Mapping and Scheduling, Chair: Nadya Bliss / MIT Lincoln Laboratory, USA Parallel Search of k-Nearest Neighbors with Synchronous Operations Nikos Pitsianis, Aristotle University, Greece Nikos Sismanis, Aristotle University, Greece Xiaobai Sun, Duke University, USA Presentation | Paper An Ingenious Approach for Improving Turnaround Time of Grid Jobs with Resource Assurance and Allocation Mechanism Prachi Pandey, Centre for Development of Advanced Computing (C-DAC), India Shamjith KV, C-DAC, India Shikha Mehrotra, C-DAC, India Asvija B., C-DAC, India R. Sridharan, C-DAC, India Presentation | Paper HPC, Chair: Patrick Dreher / DRC, USA Large-Scale Molecular Dynamics Simulations of Early- and Intermediate-Stage Sintering of Nanocrystalline SiC Bryce Devine, US Army Corps of Engineers, USA Jeffrey B. Allen, US Army Corps of Engineers, USA Charles F. Cornwell, US Army Corps of Engineers, USA Charles R. Welch, US Army Corps of Engineers, USA Presentation Not Available | Paper High Performance Java Jordan J. Ruloff, Dynamics Research Corporation, USA James A. Ross, Dynamics Research Corporation, USA David A. Richie, Brown Deer Technology, USA Song J. Park, US Army Research Laboratory, USA Dale R. Shires, US Army Research Laboratory, USA Brian J. Henz, US Army Research Laboratory, USA Presentation | Paper HPC-VMs: Virtual Machines in High Performance Computing Systems Albert Reuther, MIT Lincoln Laboratory, USA Peter Michaleas, MIT Lincoln Laboratory, USA Andrew Prout, MIT Lincoln Laboratory, USA Jeremy Kepner, MIT Lincoln Laboratory, USA Presentation | Paper Panel: The Future of Interconnects - Embedded and Big Data Chair: Craig Lund / Local Knowledge, USA Panelists:      Bill Boas of System Fabric Works and the OpenFabrics Alliance (RoCE) Sam Fuller, executive director of the RapidIO Trade Association Jeremy Kepner of Lincoln Labs and the MIT Big Data initiative Kurt Keville, Researcher, MIT Institute for Soldier Nanotechnologies Kalpesh Sheth, Director of Engineering at DRS Intelligence, Communications and Avionics Solutions HPEC Standards BoF Chair: Hahn Kim / MIT Lincoln Laboratory, USA Energy Efficient HPC Chair: Kurt Keville / MIT ISN, USA Demos: Arbitrary Waveform Generator Coln Bauer, BEEcube Inc. Seamless Fabric Demonstration of FPGA and Intel DSP using RapidIO William Pilaud, Curtiss Wright Anemone Floating Point Co-Processor for FPGAs Kristen Zaffini, BittWare Using Ruggedized HPC Technology for Radar Spectral Analysis Peter Thompson, GE Intelligent Platforms Inc. High-end Virtualization Michael Schulman, ScaleMP Computing Technologies for Challenging Form Factors Andreas Olofsson, Adapteva VSI/ProR - Performance and Portability across Key Signal Processing Jennifer Skjellum, RunTime Computing Solutions Scalable Definition Displays Andrew Jamison, Scalable Display Technologies Building High Performance Open VPX Systems with Advanced Ecosystems Architectures Keld Petersen, Annapolis Micro Systems, Inc. Posters Complex Network Modeling with an Emulab HPC Virginia  Watson Ross, AFRL/RITB, USA David L. Hench, AFRL/RITE, USA Paper Technology Transfer to Army Fielded Combat Robots Peter Raeth, Dynamics Research Corporation, USA Juan Carlos Chaves, Dynamics Research Corporation, USA Sean M. McGhee, Dynamics Research Corporation, USA Paper Use of Code Execution Profiles and Traces in the HPCMP Sustained Systems Performance Test Paul Bennett, U.S. Army Engineer Research and Development Center DoD Supercomputing, USA Paper Not Available Parallel Circuit and Interconnect Simulation Using Multi-core PC Chun-Jung Chen, Chinese Culture University, Taiwan Tien-Hao Shih, Chinese Culture University, Taiwan Paper A Novel Probe Concept for Computational Imaging of the Physiological Activity of Large Numbers of Cells M. Henninger, Massachusetts Institute of Technology, USA R. Horstmeyer, Massachusetts Institute of Technology, USA A. Zorzos, Massachusetts Institute of Technology, USA J. Scholvin, Massachusetts Institute of Technology, USA D. Lanman, Massachusetts Institute of Technology, USA E. Nieh, Massachusetts Institute of Technology, USA C. Fonstad, Massachusetts Institute of Technology, USA R. Raskar, Massachusetts Institute of Technology, USA E. Boyden, Massachusetts Institute of Technology, USA Paper Not Available Big Data Plenary Session, Chair: Dr. Chris Hill / MIT-EAPS, USA Keynote: Cloud Comuting Issues for National Security Dr. Eric Evans / Director MIT Lincoln Laboratory, USA Invited Speakers: An MIT CSAIL View on Big Data Prof. Sam Madden / MIT CSAIL, USA Astronomy Big Data Prof. Alex Szalay, Johns Hopkins University, USA FPGA, Chair: Sharon Sacco / The MITRE Corporation, USA Multithreaded FPGA Acceleration of DNA Sequence Mapping Walid A. Najjar, University of California Riverside, USA Edward B. Fernandez, University of California Riverside, USA Stefano Lonardi, University of California Riverside, USA Jason Villarreal, Jacquard Computing Inc., USA Presentation | Paper Floating Point Vector Processing using 28nm FPGAs Michael Parker, Altera Corporation, USA Dan Pritsker, Altera Corporation, USA Presentation | Paper Reconfigurable Advanced Rapid-prototyping Environment (RARE) Michael J. Bonato, Colorado Engineering, Inc., USA Larry Scally, Colorado Engineering, Inc., USA Presentation | Paper Big Security, Chair: David O’Gwynn / MIT Lincoln Laboratory, USA Large Scale Network Situational Awareness via 3D Gaming Technology Matthew Hubbell, MIT Lincoln Laboratory, USA Jeremy Kepner, MIT Lincoln Laboratory, USA Presentation | Paper Scalable Cyber-Security for Terabit Cloud Computing Jordi Ros-Giralt, Reservoir Labs Inc., USA Peter Szilagyi, Reservoir Labs Inc., USA Richard Lethin, Reservoir Labs Inc., USA Presentation | Paper Scalable Cryptographic Authentication for High Performance Computing Andrew Prout, MIT Lincoln Laboratory, USA William Arcand, MIT Lincoln Laboratory, USA David Bestor, MIT Lincoln Laboratory, USA Chansup Byun, MIT Lincoln Laboratory, USA Bill Bergeron, MIT Lincoln Laboratory, USA Matthew Hubbell, MIT Lincoln Laboratory, USA Jeremy Kepner, MIT Lincoln Laboratory, USA Peter Michaleas, MIT Lincoln Laboratory, USA Julie Mullen, MIT Lincoln Laboratory, USA Albert Reuther, MIT Lincoln Laboratory, USA Antonio Rosa, MIT Lincoln Laboratory, USA Presentation Not Available | Paper Big Data, Chair: Albert Reuther / MIT Lincoln Laboratory, USA Invited Speakers: Solutions for Weather Center Interoperability Ms. Cecelia Deluca, NOAA, USA Big Ocean Data: Numerically Conservative Parallel Query Processing for CFD Applications Prof. Bill Howe, University of Washington, USA Presentation Bio Big Data Prof. Yanlei Diao, University of Massachusetts, USA HPC, Chair: Patrick Dreher / DRC, USA On an MPI Rank/Node Layout Utility for Improving Performance of Communications Intensive Heterogeneous MPI Applications on SGI Altix ICE 8200 Systems Bracy H. Elton, AFRL/RMC DRC HPTG, USA Presentation Not Available | Paper An Update on Scalable Implementation of Primitives for Homomorphic EncRyption – FPGA Implementation Using Simulink David Bruce Cousins, Raytheon BBN Technologies, USA Kurt Rohloff, Raytheon BBN Technologies, USA Chris Peikert, Georgia Institute of Technology, USA Rick Schantz, Raytheon BBN Technologies, USA Presentation Not Available | Paper Modeling Optical Scatter from Complex Aerosol Samples Adam Milstein, MIT Lincoln Laboratory, USA Jonathan M. Richardson, MIT Lincoln Laboratory, USA Presentation Not Available | Paper Not Available Wednesday September 12 Afternoon Computer Architecture - Sponsored by Mentor Graphics, Chair: Prof. Martin Herbordt / Boston University, USA Invited Speakers: Heterogeneous Computing:  Evolving Programming Models and Emerging Platforms Prof. David Kaeli, Northeastern University, USA Scalable Accelerator Centric Clusters for HPC Prof. Martin Herbordt, Boston University, USA SoC-TM:  Integrated HW/SW Support for Transactional Memory Programming on Embedded MPSoCs Prof. Iris Bahar, Brown University, USA Rising Stars - Sponsored by The MITRE Corporation, Chair: Brian Sroka / The MITRE Corporation, USA Scrubbing Optimization via Availability Prediction (SOAP) for Reconfigurable Space Computing Quinn Martin, CHREC, University of Florida, USA Alan D. George, CHREC, University of Florida, USA Presentation | Paper CUDA and OpenCL Implementations of 3D CT Reconstruction for Biomedical Imaging Saoni Mukherjee, Northeastern University, USA Nicholas Moore, Northeastern University, USA James Brock, Northeastern University, USA Miriam Leeser, Northeastern University, USA Presentation | Paper   Optimized Parallel Distribution Load Flow So|lver on Commodity Multi-core CPU  Tao Cui, Department of ECE, Carnegie Mellon University, Pittsburgh, USA Franz Franchetti, Department of ECE, Carnegie Mellon University, Pittsburg, USA Presentation | Paper Big Data, Chair: Christopher Hill / MIT Lincoln Laboratory, USA Efficient and Scalable Computations with Sparse Tensors Muthu Baskaran, Reservoir Labs Inc., USA Benoȋt Meister, Reservoir Labs Inc., USA Nicolas Vasilache, Reservoir Labs Inc., USA Richard Lethin, Reservoir Labs Inc., USA Presentation | Paper Benchmarking Parallel Eigen Decomposition for Residuals Analysis of Very Large Graphs Edward M. Rutledge, MIT Lincoln Laboratory, USA Benjamin A. Miller, MIT Lincoln Laboratory, USA Michelle S. Beard, MIT Lincoln Laboratory, USA Presentation | Paper Driving Big Data With Big Compute Chansup Byun, MIT Lincoln Laboratory, USA William Arcand, MIT Lincoln Laboratory, USA David Bestor, MIT Lincoln Laboratory, USA Bill Bergeron, MIT Lincoln Laboratory, USA Matthew Hubbell, MIT Lincoln Laboratory, USA Jeremy Kepner, MIT Lincoln Laboratory, USA Andrew McCabe, MIT Lincoln Laboratory, USA Peter Michaleas, MIT Lincoln Laboratory, USA Julie Mullen, MIT Lincoln Laboratory, USA David O'Gwynn, MIT Lincoln Laboratory, USA Andrew Prout, MIT Lincoln Laboratory, USA Albert Reuther, MIT Lincoln Laboratory, USA Antonio Rosa, MIT Lincoln Laboratory, USA Charles Yee, MIT Lincoln Laboratory, USA Presentation | Paper HPC Chair: Patrick Dreher / DRC, USA Benchmarking LAMMPS on Utility Server GPUs Antoinetee Silas, USACE-ERDC-ITL, USA Presentation Not Available | Paper General Purpose Computing on Graphics Processing Units: Decomposition Strategy Henry Au, Space and Naval Warfare Systems Center Pacific, USA Gregory Lum, Space and Naval Warfare systems Center Pacific,USA Presentation | Paper Best Paper Awards Chair: Dr. Jeremy Kepner / MIT Lincoln Laboratory, USA Anatomy of a Globally Recursive Embedded LINPACK Benchmark Jack Dongarra, Oak Ridge National Laboratory, USA Piotr Luszczek, University of Tennessee, USA Presentation | Paper STINGER: High Performance Data Structure for Streaming Graphs  David Ediger, Georgia Institute of Technology, USA Rob McColl, Georgia Institute of Technology, USA Jason Riedy, Georgia Institute of Technology, USA David A. Bader, Georgia Institute of Technology, USA Presentation | Paper Cluster-based 3D Reconstruction of Aerial Video Scott  M. Sawyer, MIT Lincoln Laboratory, USA Karl Ni, MIT Lincoln Laboratory, USA Nadya T. Bliss, MIT Laboratory,USA Presentation | Paper   A MATLAB-to-Target Development Workflow using Sourcery VSIPL++ Winner of the Best Paper Award Stefan Seefeld, Mentor Graphics Inc., Canada Faheem Sheikh, Mentor Graphics Inc., Pakistan Brooks Moses, Mentor Graphics Inc., USA Presentation | Paper

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